[Submission form]
[Description]
[Disclaimer]
or
paste your DNA sequences
here in
multiple FASTA
format (max. 100 kb per sequence)
>rat EXAMPLE SEQUENCE AACAAACAACTACTCAATTCACTAATGTGAATGAGAAGTACCAGGTTGGTTAAGGCAGGC AATCGCTTGTCTTCACCTCCACTGGAGGAAAGAGGCCCCTTTATTTGCTTCCTTCCGCTT GCAAGTCCCACACCCAGCCCTCTCACTCCCCAAAGACTCAGCATAGCTACTGAGAGACAG CTGACTTGAGACCGAGCCTGCCCAGAAGCACAACCTTGGGCACATCCTGTAACTCCCCTT CCTGGTGCATCTATATAGAAACAGAATGCGAAGGCTTATCCCTCTTTATCTTCCTTTCAA CTTTACCAAAGAAAGTCATTATnnnnnnnnnnnnnnnnnnnnnTCCCAGTGAGGCTAGTC TGTGCTCTCAATGGGGGTCTCAAAACGAGACCTTTCCCTCCACACTCAGGCACCTTCATG GCGCCCCTATCATTAGGCATAATGTGTGCCAATGTTAAAGAAACTAAACATATGTGGCTT AGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTTCTCTAGTCTTGACTGGTCTGG >human EXAMPLE SEQUNCE TTGTTTGTTGTTGTATGAATGGGAAGTGCCAGATAAAAGGAGCAATTGCTAATCTTCACC nnnnnnnnAGTCCAGAGAGAAAGGATCACTTCATTTACCCTGCTTCTCTTCTATTTCCAC ACCAATCCCTCCCCATTCACCACGGGGGTCAAGGAGTCTACCAGAGACAGCTAAGTCAGA ACAGAGTTGACTGCCTAGATGTGTGATTTTAGGCATGTCAGTTAATTTTCCTGTCTCTTG TTCCTACACAGAATTAGAGTCTATATCACTCTTTATCTTCCTTTTACTTTTGCCAAAGGA AGGCACTAAAAACATGCTGAGGAATATCTTGCCAGCATTTACAACTGCCCTTGAAGAGAG AATATGTGTTCTCAACACAGAAAGTTAGAAATAGGGTTCTTCCTACTACATTCACGCATT ATCAAGATAGCATTATCATTAGGCACAATGTCTTCAAATGTTAAAGAAAATAAACATAGG
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Search parameters
70 %
75 %
80 %
85 %
90 %
threshold for PWMs
0 bp
5 bp
10 bp
15 bp
length of flanks to calculate homology.
10 %
50 %
75 %
threshold for homology.
Aligner:
CONREAL
LAGAN
MAVID
BLASTZ
TFBS dataset:
JASPAR vertebrates
Transfac v.8.2 vertebrates
